Employing Genetic Algorithm to Construct Epigenetic Tree-Based Features for Enhancer Region Prediction

• Main Authors: Lee, Nung Kion, Mohd Tajuddin, Abdullah, Pui, Kwan Fong
• 格式: Book Chapter
• 语言: English
• 出版: Springer, Cham 2014
• 主题: QA75 Electronic computers. Computer science
• 在线阅读: http://ir.unimas.my/id/eprint/31050/1/Employing%20Genetic%20Algorithm%20to%20Construct%20Epigenetic%20Tree-Based%20Features%20for%20Enhancer%20Region%20Prediction%20-%20Copy.pdf; http://ir.unimas.my/id/eprint/31050/; https://link.springer.com/chapter/10.1007/978-3-319-12643-2_48

This paper presents a GA-based method to generate novel logical-based features, represented by parse trees, from DNA sequences enriched with H3K4me1 histone signatures. Current methods which mostly utilize k-mers content features are not able to represent the possible complex interaction of variou...